FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471385
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG78201.6589412051719932No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19260.408583217539803No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12170.25817537681512986No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11770.2496897440521018No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11310.23993126637461945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7240.15358995301080858No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7130.15125640400097584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)