FastQCFastQC Report
Wed 31 May 2023
EGAF00007923633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486423
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12150.24978259662886007No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10470.21524475610733865No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8420.17310036737572032No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8270.17001663161487018No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7930.16302683055694325No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6630.1363011206295755No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6570.13506762632523545No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4970.10217444487616745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)