FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486423
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG71501.469914046005226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19570.4023247255989129No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13030.26787384642584744No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12140.24957701424480339No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12040.24752119040423662No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8080.16611056631779336No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7440.15295329373816616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)