FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419153
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57661.3756313327114442No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13180.31444365184073597No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11380.271499905762335No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8280.19754123196064444No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7800.18608956633973753No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7220.1722521370478083No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6020.14362297299554103No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5990.14290724389423431No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4820.11499380894327368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)