FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453838
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10340.22783460177420137No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9120.20095276288014668No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8630.19015595873417387No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7500.16525720631591007No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7380.16261309101485552No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6280.13837536742185538No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6270.13815502448010084No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6100.13440919447027352No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5170.11391730088710068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)