FastQCFastQC Report
Sun 21 May 2023
EGAF00007923641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449010
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23780.5296095855326162No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19920.4436426805639072No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16770.37348834101690387No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11860.2641366561991938No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11510.2563417295828601No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9790.21803523306830583No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4680.10422930446983363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)