FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449010
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47841.0654551123582994No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23140.5153560054341774No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21650.48217188926749965No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19600.43651589051468787No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11450.25500545644863143No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4930.10979710919578628No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4740.10556557760406228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)