FastQCFastQC Report
Sun 21 May 2023
EGAF00007923644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396975
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25670.6466402166383274No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20810.5242143711820644No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14080.35468228477863845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13530.34082750802947287No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11650.29346936205050694No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10440.2629888532023427No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10380.26147742301152466No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9790.24661502613514708No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG8980.22621071855910324No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6980.1758297121985012No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6170.15542540462245732No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5720.14408967819132187No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5390.13577681214182255No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG4390.11058630896152151No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4380.1103344039297185No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4370.11008249889791549No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4290.1080672586434914No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4250.10705963851627937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)