FastQCFastQC Report
Sun 21 May 2023
EGAF00007923650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384458
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40411.0510901060714044No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25300.658069281950174No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13180.3428202820594187No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12990.33787825978390357No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11170.2905388885131796No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10150.2640080320867299No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10060.261667074166749No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9190.23903781427360077No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG8730.22707291823814307No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6770.17609205686967105No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5990.15580375489650367No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5830.1516420519276488No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5280.13733619797221022No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4520.11756810887014967No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4250.11054523511020711No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4100.10664363857690567No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4010.10430268065692481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)