FastQCFastQC Report
Sun 21 May 2023
EGAF00007923652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443179
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32110.7245379406515201No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22270.5025057595238042No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21670.48896721189406533No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18760.42330525588983237No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14350.3237969308112523No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13800.3113865954839918No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12200.27528380180468837No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12040.2716735224367581No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11630.26242218155643654No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9700.21887318668077685No Hit
CGTCCATGGGCGGCATTCCGTGGTAGCTGGG9650.21774497437829862No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9530.21503726485235086No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9470.21368341008937697No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9090.2051089965905424No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8400.18953966681634285No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8240.1859293874484125No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8150.18389860530395166No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7650.17261648227916937No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7150.16133435925438705No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7120.16065743187290013No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6980.15749843742596106No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6850.15456508543951766No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6470.1459906719406831No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6220.14034961042829194No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5980.13493419137639645No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5710.12884184494301398No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5340.12049307390467508No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4680.10560067151196242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)