FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419167
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45701.0902575823001333No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31780.7581703712362853No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20340.4852481230631228No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17680.42178892899488746No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13400.3196816543287043No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12730.3036975716122691No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11560.27578506895819566No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11270.2688665853943655No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10180.24286262993031418No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9190.2192443584537905No Hit
CGTCCATGGGCGGCATTCCGTGGTAGCTGGG9180.21900579005503773No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8910.2125644432887131No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8840.21089446449744373No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8390.20015888655356934No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8120.1937175397872447No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7290.17391636269076524No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7190.1715306787032376No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6820.16270364794938533No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6710.1600793955631049No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6480.15459232239179133No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6420.15316091199927476No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6240.148866680821725No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5960.1421867656566476No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5700.1359839872890757No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5500.13121261931402042No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5420.1293040721239983No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5100.12166988336390985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)