FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439679
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12140.2761105260883508No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11460.26064469760893744No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10380.2360813229651632No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7680.1746728863557277No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7360.16739484942423905No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6380.14510586132155504No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6220.1414668428558107No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6130.13941989496882953No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5890.13396136727021304No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5120.11644859090381846No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4820.10962543128054786No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4600.10462178089014941No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4440.10098276242440508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)