FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439679
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27410.623409350912825No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22790.5183326927144576No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11540.2624642068418096No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8420.19150334675979522No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8240.18740945098583284No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7570.1721710611605285No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6610.1503369503660625No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6500.14783512517086328No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6440.14647049324620917No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6370.14487842266744602No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6170.14032964958526561No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5350.12167967994832593No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5230.1189504160990177No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5160.11735834552025455No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4740.1078059220476757No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4720.10735104473945764No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4620.10507665819836744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)