FastQCFastQC Report
Sun 21 May 2023
EGAF00007923659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441235
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12350.27989620043740865No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11880.269244280258819No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10820.2452208007071062No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7950.18017609663784603No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7370.16703117386426733No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6760.15320634129205526No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6390.14482078710891022No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5990.1357553231271318No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5720.12963613493943135No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4850.10991875077906331No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4840.10969211417951885No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4610.10447947238999628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)