FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007923660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441235
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28370.6429680329076343No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21100.4782032250388115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12500.2832957494305755No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8410.19060138021689121No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7920.17949618683921267No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7580.171790542454701No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7150.16204516867428922No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6610.14980679229888835No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6580.14912688250025496No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6150.13938150871984317No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6030.13666186952530965No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5180.11739775856403051No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5160.11694448536494159No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4920.11150520697587453No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4670.10583929198726304No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4570.10357292599181842No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4430.10040001359819598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)