FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427325
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45371.0617211724097584No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27520.6440063183759435No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11240.2630316503831978No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8070.18884923652957353No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7970.18650909729128884No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7600.17785058210963553No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7010.16404376060375592No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6500.15210905048850407No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5970.1397063125255953No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5760.13479202012519745No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5700.13338793658222664No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5270.12332533785760252No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4700.10998654419937985No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4670.10928450242789446No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4550.10647633534195285No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4530.1060083074942959No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4440.1039021821798397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)