FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439543
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48771.1095615218533794No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11820.26891566922917665No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6570.14947343035834948No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5970.13582288877311208No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5270.11989725692366844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4900.11147942294610538No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA4410.10033148065149486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)