FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007923672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407314
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20880.5126266222128383No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13900.34126005980643925No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8770.2153130017627678No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7160.1757857574254752No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6160.151234673986163No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6140.15074365231737677No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5520.1355219805850032No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4960.1217733738589884No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4870.11956377634945028No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4550.1117074296488704No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4480.10998885380811856No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4160.10213250710753864No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4150.10188699627314553No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4080.10016842043239367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)