FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389257
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42081.081033867085242No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13390.3439886758619627No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8180.2101439408925209No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6500.16698479410774886No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6070.15593810772831318No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5720.146946618814819No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5250.13487233370241256No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5220.1341016346526845No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4830.12408254700621954No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4680.12022905175757918No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4170.10712716791220196No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4010.10301677298031893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)