FastQCFastQC Report
Sun 21 May 2023
EGAF00007923676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409964
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20900.5098008605633665No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13500.32929720658399275No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8250.20123718180132888No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7060.17221024285059178No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6450.15733088759012986No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6180.15074494345845No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5420.13220673034705488No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4940.12049838522406844No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4820.11757129894332186No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4720.115132060376033No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4680.11415636494911748No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4550.110985354811642No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4120.10049662897230001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)