FastQCFastQC Report
Sun 21 May 2023
EGAF00007923678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396460
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41201.0391968924986128No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13180.33244211269737173No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8660.21843313322907734No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6490.1636987337940776No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5850.14755586944458457No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5640.14225899207990716No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5140.12964737930686576No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4810.12132371487665844No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4530.11426121172375525No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4480.11300005044645109No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4380.1104777278918428No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4290.10820763759269536No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4280.10795540533723454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)