FastQCFastQC Report
Wed 31 May 2023
EGAF00007923679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471816
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11910.2524289129660715No Hit
GCCAGCGGCGTCGGTGAAGTTGACGGAAGTAGAGGTGGTGCCGG9980.21152313613781643No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8800.18651338657442731No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7750.164258948403615No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7100.15048239144073114No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6960.14751513301795616No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6680.1415806161724062No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT6440.13649388744764906No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6170.13077131763229735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)