FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471816
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19980.42347016633602935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12040.2551842243586483No Hit
GTGGAACCGGCGCGTATCACTCTGACGTACA10340.2191532292249521No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8050.17061735930956134No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7800.16531868355460605No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7470.158324431558065No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6980.14793902707835258No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6810.14433592756498295No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6400.13564609932685623No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6330.13416247011546875No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5460.11572307848822423No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5030.10660935618970106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)