FastQCFastQC Report
Wed 8 May 2024
EGAF00007923682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446953
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37350.8356583354401916No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18710.4186122478202406No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11420.25550784981866104No Hit
GTGGAACCGGCGCGTATCACTCTGACGTACA9930.22217101126964134No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7340.16422308385892923No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7310.16355187234451946No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6780.1516938022566131No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6090.13625593742518788No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5750.12864887359521024No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5350.119699386736413No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5180.11589585482142417No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5030.11253979724937521No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)