FastQCFastQC Report
Wed 31 May 2023
EGAF00007923683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474570
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12570.2648713572286491No Hit
GCCAGCGGCGTCGGTGAAGTTGACGGAAGTAGAGGTGGTGCCGG9950.20966348483890682No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8700.1833238510651748No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7560.1593021050635312No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6720.1416018711675833No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6600.139073266325305No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6530.137598246833976No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT6130.12916956402638177No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5950.12537665676296436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)