FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007923684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474570
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19980.4210127062393324No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12760.26887498156225637No Hit
GTGGAACCGGCGCGTATCACTCTGACGTACA10720.22588869924352573No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8170.1721558463451124No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7740.16309501232694862No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7140.15045198811555724No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6820.14370904186948183No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6650.1401268516762543No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6280.13233032007922962No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6100.1285374128158122No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5880.12390163727163538No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5020.10577996923530775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)