FastQCFastQC Report
Wed 31 May 2023
EGAF00007923688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462306
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66651.4416858098315835No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54981.189255601268424No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25530.552231638784701No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23160.5009668920585066No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC15340.3318148585568865No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14490.3134287679588844No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14390.31126569847676644No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13970.3021808066518713No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13400.2898513106037992No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13220.285957785535987No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12870.2783870423485743No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12140.26259663512911363No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11970.2589194170095132No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10650.23036689984555683No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10470.2264733747777446No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10310.22301246360635596No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10120.21890263159033194No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9020.19510886728703497No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8100.17520862805155027No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7550.1633117458999018No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7160.15487577491964197No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7100.15357793323037122No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6220.13454292178773367No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6110.13216354535740396No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5410.11702205898257863No Hit
CCGTGGCCGGGCCCAGCAGATAACCGCATTC5010.10836978105410702No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4970.10750455326125985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4820.10425994903808301No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4800.10382733514165941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)