FastQCFastQC Report
Wed 31 May 2023
EGAF00007923698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497708
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT122732.4659037025725925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30630.6154210902778335No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16740.33634179076888454No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC16260.32669758171457963No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14010.28149035177252524No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11470.23045641219349497No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11130.22362509744669568No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9460.19007128677859308No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT9360.1880620765589462No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7970.16013405450585483No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7510.15089168749547927No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7450.14968616136369117No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7330.14727510910011493No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7050.14164932048510373No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6670.13401432165044566No Hit
ATGACCCAGGGTCGCCGCGGTAACGTTTACT6620.1330097165406222No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6550.1316032693868694No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6410.1287903750793638No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6160.12376734953024665No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6130.1231645864643526No Hit
GCATCTTATGTAACCGACGCTAGCAAATGCA6110.12276274442042322No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6080.12215998135452916No Hit
ATGGAACGTCAGCTGCCAAAAAACGTTCGCC5820.11693603478344732No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5720.11492682456380046No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5630.11311853536611828No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5600.11251577230022422No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5590.11231485127825955No Hit
CCGAAAGACCAGGAACGTAAACGTCGTTTCA5400.1084973518609305No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5320.10688998368521302No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5280.10608629959735427No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA5230.10508169448753084No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5200.10447893142163678No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5000.10046051098234306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)