FastQCFastQC Report
Sun 21 May 2023
EGAF00007923699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457166
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA52931.1577851371274328No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA48941.0705083055170332No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC16150.35326336604209413No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15770.34495128684110365No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14210.3108280143317744No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC12420.2716737465165826No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT12300.26904887940048033No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9530.2084581968037868No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9360.2047396350559753No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8520.18636556524325956No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7840.1714913182520135No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6740.14743003635440957No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6170.1349619175529239No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6080.1329932672158472No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5960.13036840009974496No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5860.1281810108363264No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5800.12686857727827527No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5670.12402497123583117No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5550.12140010411972894No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5490.12008767056167781No Hit
ACCAGACACGAAGACGGCGTTCTCATCTTCCAGTTTCAGCAGTT5390.11790028129825926No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5330.11658784774020815No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5130.11221306921337107No Hit
ACGGTCAGTGCCGTGTTCTTCGGCAATTTTGCGCAGCTCCAGAC5110.11177559136068738No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4970.10871324639190141No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4960.10849450746555957No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4760.10411972893872247No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT4630.10127612289627837No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT4620.10105738396993652No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4610.10083864504359466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)