FastQCFastQC Report
Sun 21 May 2023
EGAF00007923700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457166
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT119912.6228984657651706No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62981.377617758100996No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15750.34451380898841993No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14990.32788965058643904No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12610.2758297861170778No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10140.22180127131063992No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9880.21611405922575172No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8960.19599007800230112No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8360.18286574242178988No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6950.15202355380758847No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6740.14743003635440957No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6600.1443676913856236No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6360.1391179571534191No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6360.1391179571534191No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6090.13321200614218906No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5990.1310246168787705No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5950.1301496611734031No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5820.127306055130959No Hit
GCATCTTATGTAACCGACGCTAGCAAATGCA5790.12664983835193344No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5770.12621236049924972No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5700.12468118801485675No Hit
ATGACCCAGGGTCGCCGCGGTAACGTTTACT5570.12183758197241265No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5410.11833775915094298No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5390.11790028129825926No Hit
ATGGAACGTCAGCTGCCAAAAAACGTTCGCC5340.11680658666655No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5310.11615036988752445No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4960.10849450746555957No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4860.10630711820214102No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA4820.10543216249677359No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4820.10543216249677359No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC4730.10346351215969692No Hit
CTGGAACGTGTTACCAAACAGTCTTACGGTA4670.10215107860164578No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4630.10127612289627837No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC4590.10040116719091097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)