FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007923701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498585
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA55981.1227774602124012No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA53521.073437829056229No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC17770.3564086364411284No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17220.34537741809320377No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA16490.33073598283141287No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT13280.2663537812007983No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC12860.25792994173511036No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11290.22644082754194372No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10580.21220052749280463No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9110.182717089362897No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT9050.1815136837249416No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7400.14842002868116771No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6790.13618540469528767No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6640.13317689060039914No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6180.12395078070940761No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6140.12314851028410402No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6100.1223462398588004No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6070.1217445370398227No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5980.11993942858288958No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5720.11472467081841613No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5670.1137218327867866No Hit
ACGGTCAGTGCCGTGTTCTTCGGCAATTTTGCGCAGCTCCAGAC5630.11291956236148301No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5490.11011161587292037No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5330.10690253417170593No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5330.10690253417170593No Hit
ACCAGACACGAAGACGGCGTTCTCATCTTCCAGTTTCAGCAGTT5280.10589969614007641No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5240.10509742571477282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)