FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007923703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462576
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA53211.1502974646328388No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA48131.0404776728580816No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC16320.3528068901110304No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15760.34070077133271076No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14960.3234063159351112No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC12570.2717391304347826No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT11760.25422849434471306No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10190.22028812562692401No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9810.21207325931306426No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8860.1915360935284148No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT8010.17316073466846527No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7240.15651482134827574No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6550.14159835356784614No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6010.12992459617446647No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6000.1297084154819965No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5940.1284113313271765No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5710.12343917540036664No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5580.12062882639825671No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5390.11652139324132683No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5380.11630521254885684No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5290.1143595863166269No Hit
ACCAGACACGAAGACGGCGTTCTCATCTTCCAGTTTCAGCAGTT5220.11284632146933693No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5170.11176541800698697No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5130.11090069523710698No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT4990.10787416554252707No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4920.1063609006952371No Hit
GATGGCTTTTGCACGGTCGTACTGTTCGTTGATCATGCGCTTTA4830.10441527446300716No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4760.10290200961571719No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4640.10030784130607728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)