FastQCFastQC Report
Wed 31 May 2023
EGAF00007923705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479079
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA37160.7756549546108261No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA33000.6888216765919608No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG23840.49762147787734384No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG17760.37071130231130983No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG17560.36653662548347976No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16250.33919249226119286No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG14540.30349900538324576No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG13700.28596536270635947No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13020.27177146149173725No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12200.254655286497634No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11530.2406701191244033No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG10770.22480634717864903No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10480.21875306577829545No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9810.2047678984050647No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9600.20038448773584314No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9570.19975828621166866No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9540.19913208468749413No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9510.19850588316331963No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9480.1978796816391451No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8630.18013730512086734No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8460.17658882981721177No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG8080.16865694384433466No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7900.1648997346992876No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG7820.16322986396815556No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7770.16218619476119805No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7470.15592417951945295No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7270.15174950269162288No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7160.14945343043631634No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7030.1467398904982268No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6870.14340014903596277No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6870.14340014903596277No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6840.14277394751178824No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6840.14277394751178824No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6770.1413128106220477No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6570.13713813379421766No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6370.1329634569663876No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6230.13004118318690655No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6160.12858004629716602No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5660.11814335422759085No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5620.11730841886202484No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5140.10728919447523268No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5080.10603679142688366No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5070.10582805758549217No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5030.10499312221992614No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4890.10207084844044509No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4810.10040097770931308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)