FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007923707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525009
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA40480.7710344013150251No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA37020.7051307691868139No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG25900.49332487633545324No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG19190.3655175435087779No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG18700.35618437017270177No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17690.33694660472487137No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG17120.32608964798698686No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG15140.28837600879223024No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14090.26837635164349566No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14060.2678049328678175No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG13130.25009095082179544No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12030.22913892904693062No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG11440.21790102645859402No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG10870.20704406972070957No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10760.20494886754322308No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10430.19866326101076362No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA10320.19656805883327713No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10050.19142528985217397No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9460.18018738726383737No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9380.17866360386202904No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9180.17485414535750815No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8800.1676161741989185No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8650.16475908032052783No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8520.16228293229258928No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8500.16190198644213719No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8310.15828300086284233No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG8300.1580925279376163No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG8010.15256881310606105No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7940.1512355026294787No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7920.15085455677902665No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7600.14475942317179324No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7540.143616585620437No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG7500.1428546939195328No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7210.13733097908797753No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7140.13599766861139523No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6870.13085489963029204No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT6660.12685496820054515No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6650.1266644952753191No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6500.12380740139692843No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6380.12152172629421591No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5950.11333139050949603No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5750.10952193200497516No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5640.10742672982748866No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5470.10418869009864594No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5430.10342679839774176No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5260.10018875866889901No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)