FastQCFastQC Report
Wed 31 May 2023
EGAF00007923709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484192
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA35300.7290496332033574No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA34590.7143860286828366No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG24550.5070302689842046No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG18170.37526435794065166No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG16960.3502742713634261No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16210.3347845482783689No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG14850.3066965170841319No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14380.29698962395082945No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG14080.2907937347168066No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13150.2715864780913357No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG12420.2565098142885467No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG10390.21458429713832528No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10150.209627585751107No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9760.20157292974687727No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9730.200953340823475No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9280.1916595069724407No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9250.19103991804903842No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9010.1860832066618201No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8990.18567014737955193No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8980.1854636177384178No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8570.1769959024519199No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8480.17513713568171305No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG7800.16109312008459456No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7740.15985394223778998No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG7670.1584082347498513No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7650.15799517546758313No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7250.14973398982221928No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7020.1449838080761351No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6900.14250545238252593No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6870.14188586345912366No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6840.14126627453572138No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6820.14085321525345318No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6760.1396140374066486No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6760.1396140374066486No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6710.13858138920097812No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6680.13796180027757585No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6650.13734221135417354No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6340.13093979247901658No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5960.12309166611592096No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5630.1162761879584958No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5570.11503701011169123No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5250.10842806159540018No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5160.10656929482519331No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4930.10181911307910911No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4920.10161258343797502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)