FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461387
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63011.3656648323424805No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8250.17880867904817432No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6200.13437743152711282No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5550.12028947499604455No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5320.11530450576197422No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5170.11205343887018923No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5140.11140322549183224No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5020.10880237197840426No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4840.10490109170826227No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4630.10034959805976326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)