FastQCFastQC Report
Wed 31 May 2023
EGAF00007923718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465168
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67321.4472190692395006No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8060.17327073229456885No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6340.1362948440133457No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6160.1324252743094968No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5180.11135761703298594No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5060.10877790389708664No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5030.10813297561311182No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4850.10426340590926289No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4750.10211364496268015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)