FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419520
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10010.23860602593440122No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8410.2004672006102212No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7380.17591533180778032No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6930.16518878718535468No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6430.15327040427154842No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5970.1423054919908467No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4410.10512013729977115No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4220.1005911517925248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)