FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400160
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40811.0198420631747303No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7890.19717113154738103No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6510.16268492602958817No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6240.15593762495002No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5950.1486905237904838No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5370.13419632147141144No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4090.10220911635345861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)