FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007923724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007923724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422812
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10680.25259453374076424No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8410.1989063697340662No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7130.16863286756288845No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6730.15917239813439543No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6550.15491518689157355No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5650.13362913067746424No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4640.10974144537051929No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4240.10028097594202624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)