FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527545
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30450.5772019448577846No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24260.4598659829967112No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23750.4501985612601769No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16530.3133381986370831No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15490.29362424058611114No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13820.261968173331185No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13560.257039683818442No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11280.21382062193746504No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10210.19353799201963814No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9060.171738903790198No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8930.1692746590338265No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8520.1615028101868087No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8140.1542996332066459No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7940.1505084874276128No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA7640.14482176875906322No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7330.13894549280156196No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6920.13117364395454417No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6860.13003630022083423No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6460.12245400866276811No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6270.11885242017268668No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5550.10520429536816764No Hit

[OK]Adapter Content

Adapter graph