FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500179
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47800.9556578744809358No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29020.5801922911597648No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22440.44863938709941836No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20830.4164509105740145No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15290.3056905627785253No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14650.2928951435386132No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12840.2567080985007368No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12480.24951067517828615No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10750.21492305754539875No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8400.16793987752384648No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8290.16574066484198657No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7930.158543241519536No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7440.14874674866397827No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7260.145148037002753No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA7160.14314875274651673No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6880.1375507568290552No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6470.12935369137848649No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6240.12475533758914308No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6140.12275605333290682No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5590.11175998992360736No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5280.10556220872927492No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5280.10556220872927492No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5150.10296313919616777No Hit

[OK]Adapter Content

Adapter graph