FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007924326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507679
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44880.884023172122542No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27780.5471961613539263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22520.4435873849420599No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21250.41857157770953696No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15210.2995987622099791No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14590.2873863208838656No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13180.2596128656099622No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12660.2493701728848347No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11300.22258159191142435No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9500.18712611709367533No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8320.16388308360203988No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7880.15521618975770124No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7540.14851904451434864No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7460.1469432456335598No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7430.14635232105326398No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6980.1374884523488267No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6630.13059433224537553No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6310.12429113672222014No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6210.12232138812123408No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5720.1126696199764024No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5540.10912407249462752No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5450.10735129875374005No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5140.1012450780906833No Hit

[OK]Adapter Content

Adapter graph