FastQCFastQC Report
Wed 31 May 2023
EGAF00007924335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467661
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG18960.4054218761025615No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG16630.35559946200345977No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG14600.31219195100724667No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14500.3100536499729505No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC14430.30855683924894317No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT12970.2773376441482185No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11560.24718759956464192No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11110.23756524491030895No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT10690.22858438056626487No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10500.22452160860110207No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10030.2144715937399099No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8460.1809002675014594No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8110.17341621388142267No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7370.1575927862276307No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6860.14668745095272004No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT6390.13663743609152784No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6260.13385764474694276No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6100.13043636309206882No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5800.1240214599891802No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5670.12124166864459512No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5670.12124166864459512No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5600.11974485792058777No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5590.11953102781715814No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5330.113971445127988No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5170.11055016347311407No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4980.10648739150795127No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA4720.10092780881878112No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT4690.10028631850849225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)