FastQCFastQC Report
Wed 31 May 2023
EGAF00007924336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467661
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45510.9731408007082052No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC20590.44027618296158966No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC17830.3812590744150143No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC15070.3222419658684389No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14510.3102674800763801No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14160.3027834264563434No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC13610.2910227707677142No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11850.2533886725641009No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10980.2347854535657239No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10790.2307226816005611No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10360.2215279871530874No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9920.21211946260218406No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9320.19928965639640678No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8560.1830385685357556No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8100.17320238377799305No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8090.1729885536745634No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7780.16635982046824516No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7220.15438533467618637No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6870.14690128105614964No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6520.1394172274361129No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6510.1392033973326833No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6240.13342998454008353No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6070.12979487278177998No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6070.12979487278177998No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5840.12487678040289868No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5270.11268846450741027No Hit
GCTGGTTGGACCGAGTCTTCCCCGCTGCCGA5180.1107639935765437No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5160.11033633336968444No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA4820.10306610985307733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)