FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495514
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG20230.4082629350532982No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG17160.3463070670051704No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG16120.325318759913948No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC15250.30776123378955994No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15070.3041286421776176No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT13440.2712335070250285No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11910.24035647832351864No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11630.23470578026049715No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT11420.23046775671323108No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11070.22340438413445432No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10470.21129574542797983No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8430.17012637382596657No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8280.16709921414934795No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7530.15196341576625483No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7390.1491380667347441No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT6980.1408638302853199No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6690.13501132157719056No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6530.13178235125546403No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6450.13016786609460076No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6070.12249906158050025No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5830.11765560609791047No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5730.11563749964683136No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5560.11220671867999694No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5430.10958318029359412No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG5290.10675783126208342No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5260.10615239932675968No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5110.10312523965014106No Hit
CGGGTCGACGGTGTTCACCTGGCTCAGATAAGGGTAAGACGTGC5010.10110713319906198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)