FastQCFastQC Report
Sun 21 May 2023
EGAF00007924338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495514
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCACGAAGAACAGCCGCGTTACGAAGATC22010.4441852298825058No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC18450.3723406402240905No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC16860.34025274765193314No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15580.31442098507812094No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15210.3069539912091283No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC14490.2924236247613589No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12760.2575103831576908No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11830.23874199316265532No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11710.23632026542136042No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11170.22542249058553337No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10700.21593739026546174No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9670.1951508938193472No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9400.18970200640143367No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9290.18748208930524668No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8560.17274991221236938No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8100.16346662253740563No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8040.16225575866675815No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7820.15781592447438417No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7530.15196341576625483No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT7400.14933987737985205No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6800.13723123867337755No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6750.136222185447838No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6480.1307732980299245No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6090.12290268287071607No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5970.12048095512942117No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5660.11422482513107601No Hit
GCTGGTTGGACCGAGTCTTCCCCGCTGCCGA5650.1140230144859681No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5560.11220671867999694No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5190.10473972481100434No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5080.10251980771481735No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5040.10171256513438572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)