FastQCFastQC Report
Sun 21 May 2023
EGAF00007924340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472366
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42250.8944335536427261No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC20770.4397014179682704No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC18100.3831774513830377No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC15730.3330044922792919No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13500.2857953366669066No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13160.27859752818788824No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC12800.270976319210104No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12030.25467540000762123No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11410.24154998454588178No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11000.23287027432118318No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9980.211276848884128No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9840.2083130453927675No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9160.1939174284347307No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8810.18650791970632943No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8800.18629621945694652No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7930.16787829776063476No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7760.16427939352112558No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7390.1564464842939585No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7090.15009547681247168No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6610.13993386484209278No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6590.13951046434332698No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6380.13506475910628624No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6240.1321009556149257No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5980.12659674913097047No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5710.12088084239763235No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5650.11961064090133498No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5330.11283623292108239No Hit
GCTGGTTGGACCGAGTCTTCCCCGCTGCCGA5310.11241283242231659No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA4940.10457992319514951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)