FastQCFastQC Report
Wed 31 May 2023
EGAF00007924342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508425
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27380.5385258396026946No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18780.3693760141613807No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14550.2861779023454787No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13910.2735900083591483No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12540.24664404779465998No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11840.23287603874711116No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11010.216551113733589No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10390.20435659143433152No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10210.20081624625067612No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9680.19039189654324631No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9650.18980183901263706No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8930.17564045827801544No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8820.1734769139991149No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8600.16914982544131385No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8350.1642326793529036No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7920.15577518808083787No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7580.1490878694005999No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7560.14869449771352708No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7480.14712101096523578No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7090.13945026306731573No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6800.1337463736047598No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6400.12587893986330334No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6010.11820819196538329No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5740.11289767418990017No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5380.10581698382258937No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5220.10267001032600678No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5220.10267001032600678No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)