FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007924347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007924347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515429
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC36070.6998054048181224No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT34310.6656590917468749No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28480.5525494296983677No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26980.5234474583308274No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22570.43788766251025846No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19930.3866681929033873No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG19300.37444536492902025No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17150.33273253930221236No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17030.3304043815928091No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16700.3240019478919502No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16640.3228378690372486No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT15470.300138331370567No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14930.2896616216782525No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13880.26929024172097416No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13860.2689022154360737No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13770.2671560971540212No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13140.25493326917965425No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12680.24600866462694185No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT12290.2384421520713813No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11960.23203971837052242No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10730.20817610184913926No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10000.1940131424502696No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC9310.18062623562120098No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9190.17829807791179775No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9130.17713399905709612No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9000.17461182820524263No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7910.15346439567816325No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7870.15268834310836216No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7690.1491961065442573No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7630.14803202768955567No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7280.14124156770379626No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6590.12785466087472766No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6500.12610854259267523No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6470.12552650316532443No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6040.11718393803996283No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6030.11698992489751256No Hit
CGGGTTCTGCATGATATCATCCATGATCACTACGCTCTGCTGGT5800.11252762262115636No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG5700.11058749119665365No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5660.1098114386268526No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5510.10690124149009854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)